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Build a QDNAseq object from the WisecondorX output files

BuildWxQdnaObject.Rd

In order to do 1-to-1 comparisons between QDNAseq and WisecondorX outputs it is useful to have outputs in the same format. This function creates a QDNAseq object out of the WisecondorX output files and returns it.

Usage

BuildWxQdnaObject(
  input_path,
  genome_used = "hg19",
  bin_size = 30000,
  Xincluded = FALSE
)

Arguments

input_path

(string) The path to the output files generated by WisecondorX. A directory.

genome_used

(string) The reference genome used for alignment. (default: hg19)

bin_size

(integer) The bin size used during copy number calling in base pairs. (default: 30000)

Xincluded

(logical) Whether or not the X chromosome was included in this analysis. (default: FALSE)

Value

A QDNAseq object.