Determines number of large genomic alterations (LGAs) for sizes 3:11

Uses DetermineNumberOfLGAs to determine the number of LGAs for sizes 3 to 11 (Mb).

Usage

CallLGA(threshold, segments)

Arguments

threshold

A float. Threshold in ratio_median difference previously estimated.

segments

A data frame: segment data that's (ideally) already been processed (merging segments, small ones have been reinserted, and so on)